1PQV Transferase Transcription date Jun 19, 2003
title Rna Polymerase II-Tfiis Complex
authors H.Kettenberger, K.J.Armache, P.Cramer
compound source
Molecule: Dna-Directed Rna Polymerase II Largest Subunit
Chain: A
Synonym: B220
Ec: 2.7.7.6
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerase II 140 Kda Polypeptide;
Chain: B
Synonym: B150; Rna Polymerase II Subunit 2
Ec: 2.7.7.6

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerase II 45 Kda Polypeptide;
Chain: C
Synonym: B44.5
Ec: 2.7.7.6

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerase II 32 Kda Polypeptide;
Chain: D
Synonym: B32
Ec: 2.7.7.6

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerases I, II, And III 27 Kda Polypeptide;
Chain: E
Synonym: Abc27
Ec: 2.7.7.6

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerases I, II, And III 23 Kda Polypeptide;
Chain: F
Synonym: Abc23
Ec: 2.7.7.6

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerase II 19 Kda Polypeptide;
Chain: G
Synonym: B16
Ec: 2.7.7.6

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerases I, II, And III 14.5 Kda Polypeptide;
Chain: H
Synonym: Abc14.4
Ec: 2.7.7.6

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerase II 14.2 Kda Polypeptide;
Chain: I
Synonym: B12.6
Ec: 2.7.7.6

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerases I, II, And III 8.3 Kda Polypeptide;
Chain: J
Synonym: Abc10-Beta; Abc8
Ec: 2.7.7.6

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerase II 13.6 Kda Polypeptide;
Chain: K
Synonym: B13.6
Ec: 2.7.7.6

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Dna-Directed Rna Polymerases I, II, And III 7.7 Kda Polypeptide;
Chain: L
Synonym: Abc10-Alpha
Ec: 2.7.7.6

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Transcription Elongation Factor S-II
Chain: S
Synonym: Dna Strand Transfer Protein Alpha; Stp-Alpha; Dna Strand Transferase 1; Pyrimidine Pathway Regulatory Protein 2

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
symmetry Space Group: C 2 2 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
218.900 395.300 281.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.80 Å
ligand MG, ZN enzyme Transferase E.C.2.7.7.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • RNA-directed 5'-3' RNA polym...


  • B
  • RNA-directed 5'-3' RNA polym...


  • C
  • RNA-directed 5'-3' RNA polym...


  • D
  • RNA-directed 5'-3' RNA polym...


  • E
  • RNA-directed 5'-3' RNA polym...


  • F
  • RNA-directed 5'-3' RNA polym...


  • G
  • RNA-directed 5'-3' RNA polym...


  • H
  • RNA-directed 5'-3' RNA polym...


  • I
  • RNA-directed 5'-3' RNA polym...


  • J
  • RNA-directed 5'-3' RNA polym...

  • DNA-directed RNA polymerase ...
  • K
  • RNA-directed 5'-3' RNA polym...


  • L
  • RNA-directed 5'-3' RNA polym...


  • S
  • transcription factor activit...


  • Primary referenceArchitecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavage., Kettenberger H, Armache KJ, Cramer P, Cell 2003 Aug 8;114(3):347-57. PMID:12914699
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (1pqv.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 1PQV
  • CSU: Contacts of Structural Units for 1PQV
  • Likely Quarternary Molecular Structure file(s) for 1PQV
  • Structure Factors (937 Kb)
  • Retrieve 1PQV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PQV from S2C, [Save to disk]
  • View 1PQV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PQV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1PQV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pqva_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1pqvb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1pqvc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1pqvd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1pqve_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1pqvf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1pqvg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1pqvh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1pqvi_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1pqvj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1pqvk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1pqvl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1pqvs_, region S [Jmol] [rasmolscript] [script source]
  • Fold representative 1pqv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pqv_G] [1pqv_I] [1pqv_D] [1pqv_J] [1pqv] [1pqv_E] [1pqv_L] [1pqv_K] [1pqv_S] [1pqv_B] [1pqv_H] [1pqv_F] [1pqv_C] [1pqv_A]
  • SWISS-PROT database: [P20434] [P20435] [P20436] [P40422] [P22139] [P38902] [P04050] [P08518] [P16370] [P20433] [P34087] [P27999] [P07273]
  • Domain organization of [RPAB1_YEAST] [RPAB2_YEAST] [RPAB3_YEAST] [RPAB4_YEAST] [RPAB5_YEAST] [RPB11_YEAST] [RPB1_YEAST] [RPB2_YEAST] [RPB3_YEAST] [RPB4_YEAST] [RPB7_YEAST] [RPB9_YEAST] [TFS2_YEAST] by SWISSPFAM
  • Domains found in 1PQV: [RNA_pol_Rpb6] [RPOL4c] [RPOL8c] [RPOL9] [RPOLA_N] [RPOLCX] [RPOLD] [S1] [TFS2M] [TFS2N] [ZnF_C2C2 ] by SMART
  • Other resources with information on 1PQV
  • Community annotation for 1PQV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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