1PRC Photosynthetic Reaction Center date Feb 04, 1988
title Crystallographic Refinement At 2.3 Angstroms Resolution And Model Of The Photosynthetic Reaction Center From Rhodopseud Viridis
authors J.Deisenhofer, O.Epp, K.Miki, R.Huber, H.Michel
compound source
Molecule: Photosynthetic Reaction Center
Chain: C
Engineered: Yes
 Organism_scientific: Blastochloris Viridis
Organism_taxid: 1079

Molecule: Photosynthetic Reaction Center
Chain: L
Engineered: Yes
Organism_scientific: Blastochloris Viridis
Organism_taxid: 1079

Molecule: Photosynthetic Reaction Center
Chain: M
Engineered: Yes
Organism_scientific: Blastochloris Viridis
Organism_taxid: 1079

Molecule: Photosynthetic Reaction Center
Chain: H
Engineered: Yes
Organism_scientific: Blastochloris Viridis
Organism_taxid: 1079
symmetry Space Group: P 43 21 2
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
223.500 223.500 113.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand BCB, BPB, FE, FME, HEC, LDA, MQ7, NS1, SO4, UQ1 enzyme
note 1PRC (Molecule of the Month:pdb22)
related structures by homologous chain: 5PRC, 6PRC
Gene
Ontology
ChainFunctionProcessComponent
C
  • electron transfer activity


    • H
  • electron transporter, transf...


    • L


    M


    Primary referenceCrystallographic refinement at 2.3 A resolution and refined model of the photosynthetic reaction centre from Rhodopseudomonas viridis., Deisenhofer J, Epp O, Sinning I, Michel H, J Mol Biol. 1995 Feb 24;246(3):429-57. PMID:7877166
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (223 Kb) [Save to disk]
  • Biological Unit Coordinates (1prc.pdb1.gz) 206 Kb
  • Biological Unit Coordinates (1prc.pdb2.gz) 407 Kb
  • LPC: Ligand-Protein Contacts for 1PRC
  • CSU: Contacts of Structural Units for 1PRC
  • Likely Quarternary Molecular Structure file(s) for 1PRC
  • Structure Factors (1091 Kb)
  • Retrieve 1PRC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PRC from S2C, [Save to disk]
  • Re-refined 1prc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1PRC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1PRC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PRC, from MSDmotif at EBI
  • Genome occurence of 1PRC's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1prcc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1prch2, region H:1-36 [Jmol] [rasmolscript] [script source]
        - Domain d1prch1, region H:37-258 [Jmol] [rasmolscript] [script source]
        - Domain d1prcl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1prcm_, region M [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1prc] [1prc_M] [1prc_H] [1prc_C] [1prc_L]
  • SWISS-PROT database: [P07173] [P06008] [P06009] [P06010]
  • Domain organization of [CYCR_RHOVI] [RCEH_RHOVI] [RCEL_RHOVI] [RCEM_RHOVI] by SWISSPFAM
    • Other resources with information on 1PRC
  • Community annotation for 1PRC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1PRC from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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