1PUP Peptide Nucleic Acid date Nov 01, 1996
title Crystal Structure Of A Peptide Nucleic Acid (Pna) Duplex At Angstroms Resolution
authors H.Rasmussen, J.S.Kastrup
compound source
Molecule: Pna (H-P(Cpngpntpnapncpngpn)-Nh2)
Chain: A, B
Engineered: Yes
symmetry Space Group: P -1
R_factor 0.205 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
17.970 26.920 33.780 88.20 79.40 82.50
method X-Ray Diffractionresolution 1.70 Å
ligand APN, CPN, GPN, NH2, TPN enzyme
Primary referenceCrystal structure of a peptide nucleic acid (PNA) duplex at 1.7 A resolution., Rasmussen H, Kastrup JS, Nielsen JN, Nielsen JM, Nielsen PE, Nat Struct Biol 1997 Feb;4(2):98-101. PMID:9033585
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (1pup.pdb1.gz) 8 Kb
  • LPC: Ligand-Protein Contacts for 1PUP
  • CSU: Contacts of Structural Units for 1PUP
  • Likely Quarternary Molecular Structure file(s) for 1PUP
  • Retrieve 1PUP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PUP from S2C, [Save to disk]
    • View 1PUP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1PUP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PUP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pup] [1pup_A] [1pup_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1PUP
  • Community annotation for 1PUP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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