1PXP Transferase date Jul 04, 2003
title Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor N-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Yl]- N',N'-Dimethyl-Benzene-1,4-Diamine
authors S.Wang, C.Meades, G.Wood, A.Osnowski, S.Anderson, R.Yuill, M.Thomas, M.Mezna, W.Jackson, C.Midgley, G.Griffiths, I.Mcnae, S.Y.Wu, C.Mcinnes, D.Zheleva, M.D.Walkinshaw, P.M.Fischer
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Synonym: P33 Protein Kinase
Ec: 2.7.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Hi5
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.230 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.337 71.794 71.414 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CK8 enzyme Transferase E.C.2.7.1 BRENDA
related structures by homologous chain: 1V1K, 1VYW
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference2-Anilino-4-(thiazol-5-yl)pyrimidine CDK inhibitors: synthesis, SAR analysis, X-ray crystallography, and biological activity., Wang S, Meades C, Wood G, Osnowski A, Anderson S, Yuill R, Thomas M, Mezna M, Jackson W, Midgley C, Griffiths G, Fleming I, Green S, McNae I, Wu SY, McInnes C, Zheleva D, Walkinshaw MD, Fischer PM, J Med Chem 2004 Mar 25;47(7):1662-75. PMID:15027857
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (1pxp.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 1PXP
  • CSU: Contacts of Structural Units for 1PXP
  • Likely Quarternary Molecular Structure file(s) for 1PXP
  • Structure Factors (89 Kb)
  • Retrieve 1PXP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PXP from S2C, [Save to disk]
  • Re-refined 1pxp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1PXP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PXP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1PXP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pxpa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1pxp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pxp_A] [1pxp]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 1PXP: [S_TKc ] by SMART
  • Other resources with information on 1PXP
  • Community annotation for 1PXP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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