1PY0 Electron Transport date Jul 07, 2003
title Crystal Structure Of E51ce54c Psaz From A.Faecalis With Cla
authors M.Prudencio, J.Rohovec, J.A.Peters, E.Tocheva, M.J.Boulanger, M.E H.J.Hupkes, W.Kosters, A.Impagliazzo, M.Ubbink
compound source
Molecule: Pseudoazurin
Chain: A
Synonym: Cupredoxin, Blue Copper Protein
Engineered: Yes
Mutation: Yes
Organism_scientific: Alcaligenes Faecalis
Organism_taxid: 511
Strain: S-6
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24c
symmetry Space Group: P 65
R_factor 0.193 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.700 42.700 116.900 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand SO4, Y1, YMA, ZN enzyme
related structures by homologous chain: 1ZIB, 7PAZ
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


  • Primary referenceA caged lanthanide complex as a paramagnetic shift agent for protein NMR., Prudencio M, Rohovec J, Peters JA, Tocheva E, Boulanger MJ, Murphy ME, Hupkes HJ, Kosters W, Impagliazzo A, Ubbink M, Chemistry 2004 Jul 5;10(13):3252-60. PMID:15224334
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (1py0.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 1PY0
  • CSU: Contacts of Structural Units for 1PY0
  • Likely Quarternary Molecular Structure file(s) for 1PY0
  • Retrieve 1PY0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PY0 from S2C, [Save to disk]
  • View 1PY0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PY0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PY0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1py0a_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1py0_A] [1py0]
  • SWISS-PROT database: [P04377]
  • Domain organization of [AZUP_ALCFA] by SWISSPFAM
  • Other resources with information on 1PY0
  • Community annotation for 1PY0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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