1PYC Transcription Regulation date Feb 17, 1996
title Cyp1 (Hap1) Dna-Binding Domain (Residues 60-100), Nmr, 15 St
authors J.Timmerman, A.L.Vuidepot, F.Bontems, J.Y.Lallemand, M.Gervais E.Shechter, B.Guiard
compound source
Molecule: Cyp1
Chain: A
Fragment: Residues 56 - 126
Synonym: Hap1
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
methodSolution NMR
ligand ZN enzyme
related structures by homologous chain: 1QP9
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference1H, 15N resonance assignment and three-dimensional structure of CYP1 (HAP1) DNA-binding domain., Timmerman J, Vuidepot AL, Bontems F, Lallemand JY, Gervais M, Shechter E, Guiard B, J Mol Biol 1996 Jun 21;259(4):792-804. PMID:8683583
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk]
  • Biological Unit Coordinates (1pyc.pdb1.gz) 12 Kb
  • LPC: Ligand-Protein Contacts for 1PYC
  • CSU: Contacts of Structural Units for 1PYC
  • Original NMR restraints for 1PYC from PDB
  • Retrieve 1PYC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PYC from S2C, [Save to disk]
    • View 1PYC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1PYC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PYC, from MSDmotif at EBI
  • Genome occurence of 1PYC's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pyc__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pyc] [1pyc_A]
  • SWISS-PROT database: [P0CE42]
  • Domain organization of [HAP1W_YEAST] by SWISSPFAM
  • Domain found in 1PYC: [GAL4 ] by SMART
    • Other resources with information on 1PYC
  • Community annotation for 1PYC at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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