1PZN Recombination date Jul 12, 2003
title Rad51 (Rada)
authors D.S.Shin, J.A.Tainer
compound source
Molecule: Dna Repair And Recombination Protein Rad51
Chain: A, B, C, D, E, F, G
Synonym: Rad51; Rada; Recombinase Rada
Engineered: Yes
 Organism_scientific: Pyrococcus Furiosus
Organism_taxid: 2261
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.257 R_Free 0.307
crystal
cell
length a length b length c angle alpha angle beta angle gamma
144.163 193.124 176.930 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.85 Å
ligand GOL, IMD, MPD, MSE, SO4 enzyme
note 1PZN (Molecule of the Month:pdb172)
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, G, E, B


Primary referenceFull-length archaeal Rad51 structure and mutants: mechanisms for RAD51 assembly and control by BRCA2., Shin DS, Pellegrini L, Daniels DS, Yelent B, Craig L, Bates D, Yu DS, Shivji MK, Hitomi C, Arvai AS, Volkmann N, Tsuruta H, Blundell TL, Venkitaraman AR, Tainer JA, EMBO J 2003 Sep 1;22(17):4566-76. PMID:12941707
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (271 Kb) [Save to disk]
  • Biological Unit Coordinates (1pzn.pdb1.gz) 512 Kb
  • Biological Unit Coordinates (1pzn.pdb2.gz) 259 Kb
  • LPC: Ligand-Protein Contacts for 1PZN
  • CSU: Contacts of Structural Units for 1PZN
  • Likely Quarternary Molecular Structure file(s) for 1PZN
  • Structure Factors (1178 Kb)
  • Retrieve 1PZN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PZN from S2C, [Save to disk]
  • Re-refined 1pzn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1PZN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1PZN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PZN, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pzna1, region A:35-95 [Jmol] [rasmolscript] [script source]
        - Domain d1pzna2, region A:96-349 [Jmol] [rasmolscript] [script source]
        - Domain d1pznb1, region B:96-349 [Jmol] [rasmolscript] [script source]
        - Domain d1pznc1, region C:96-349 [Jmol] [rasmolscript] [script source]
        - Domain d1pznd1, region D:96-349 [Jmol] [rasmolscript] [script source]
        - Domain d1pzne1, region E:96-349 [Jmol] [rasmolscript] [script source]
        - Domain d1pznf1, region F:96-349 [Jmol] [rasmolscript] [script source]
        - Domain d1pzng1, region G:96-349 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pzn_C] [1pzn_A] [1pzn] [1pzn_G] [1pzn_F] [1pzn_E] [1pzn_D] [1pzn_B]
  • SWISS-PROT database: [O74036]
  • Domain organization of [RADA_PYRFU] by SWISSPFAM
  • Domains found in 1PZN: [AAA] [HhH1 ] by SMART
    • Other resources with information on 1PZN
  • Community annotation for 1PZN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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