1PZS Oxidoreductase, Metal Binding Protein date Jul 14, 2003
title Crystal Structure Of A Cu-Zn Superoxide Dismutase From Mycob Tuberculosis At 1.63 Resolution
authors K.Djinovic-Carugo, L.Spagnolo, I.Toro
compound source
Molecule: Superoxide Dismutase [Cu-Zn]
Chain: A
Fragment: Sequence Database Residues 33-240
Ec: 1.15.1.1
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Sodc Or Rv0432 Or Mt0447 Or Mtcy22g10.29
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Qc871
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Puc19
symmetry Space Group: C 1 2 1
R_factor 0.150 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.040 58.420 51.390 90.00 126.99 90.00
method X-Ray Diffractionresolution 1.63 Å
ligand CU enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
related structures by homologous chain: 1JCV, 1YAZ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceUnique features of the sodC-encoded superoxide dismutase from mycobacterium tuberculosis, a fully functional copper-containing enzyme lacking zinc in the active site., Spagnolo L, Toro I, D'Orazio M, O'Neill P, Pedersen J, Carugo O, Rotilio G, Battistoni A, Djinovic-Carugo K, J Biol Chem 2004 Jun 3;. PMID:15155722
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (1pzs.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 1PZS
  • CSU: Contacts of Structural Units for 1PZS
  • Likely Quarternary Molecular Structure file(s) for 1PZS
  • Structure Factors (200 Kb)
  • Retrieve 1PZS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PZS from S2C, [Save to disk]
  • Re-refined 1pzs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1PZS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PZS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PZS, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pzsa_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pzs_A] [1pzs]
  • SWISS-PROT database: [P0A608]
  • Domain organization of [SODC_MYCTU] by SWISSPFAM
  • Other resources with information on 1PZS
  • Community annotation for 1PZS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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