1PZU Transcription Dna date Jul 14, 2003
title An Asymmetric Nfat1-Rhr Homodimer On A Pseudo-Palindromic, K Site
authors L.Jin, P.Sliz, L.Chen, F.Macian, A.Rao, P.G.Hogan, S.C.Harrison
compound source
Molecule: 5'-D(Tptpgpapgpgpapaptptptpcpcpa)-3
Chain: X, V, T
Engineered: Yes
 Synthetic: Yes

Molecule: 5'-D(Apaptpgpgpapapaptptpcpcptpc)-3
Chain: Y, Z, W
Engineered: Yes
Synthetic: Yes

Molecule: Nuclear Factor Of Activated T-Cells, Cytoplasmic
Chain: B, D, H, I, L, M
Fragment: Nfat1 Dna-Binding Domain
Synonym: T Cell Transcription Factor Nfat1, Nfat Pre-Existi Subunit, Nf-Atp, Rhr;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nfat1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_plasmid: Plm1
symmetry Space Group: P 21 21 21
R_factor 0.296 R_Free 0.319
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.700 122.900 241.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
Gene
Ontology
ChainFunctionProcessComponent
H, M, D, I, L, B


Primary referenceAn asymmetric NFAT1 dimer on a pseudo-palindromic kappa B-like DNA site., Jin L, Sliz P, Chen L, Macian F, Rao A, Hogan PG, Harrison SC, Nat Struct Biol 2003 Oct;10(10):807-11. Epub 2003 Aug 31. PMID:12949491
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (303 Kb) [Save to disk]
  • Biological Unit Coordinates (1pzu.pdb1.gz) 102 Kb
  • Biological Unit Coordinates (1pzu.pdb2.gz) 101 Kb
  • Biological Unit Coordinates (1pzu.pdb3.gz) 101 Kb
  • CSU: Contacts of Structural Units for 1PZU
  • Likely Quarternary Molecular Structure file(s) for 1PZU
  • Structure Factors (330 Kb)
  • Retrieve 1PZU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PZU from S2C, [Save to disk]
  • Re-refined 1pzu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1PZU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1PZU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PZU, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pzub2, region B:399-571 [Jmol] [rasmolscript] [script source]
        - Domain d1pzub1, region B:576-678 [Jmol] [rasmolscript] [script source]
        - Domain d1pzud2, region D:399-571 [Jmol] [rasmolscript] [script source]
        - Domain d1pzud1, region D:576-678 [Jmol] [rasmolscript] [script source]
        - Domain d1pzuh2, region H:399-571 [Jmol] [rasmolscript] [script source]
        - Domain d1pzuh1, region H:576-678 [Jmol] [rasmolscript] [script source]
        - Domain d1pzui2, region I:399-571 [Jmol] [rasmolscript] [script source]
        - Domain d1pzui1, region I:576-678 [Jmol] [rasmolscript] [script source]
        - Domain d1pzul2, region L:399-571 [Jmol] [rasmolscript] [script source]
        - Domain d1pzul1, region L:576-678 [Jmol] [rasmolscript] [script source]
        - Domain d1pzum2, region M:399-571 [Jmol] [rasmolscript] [script source]
        - Domain d1pzum1, region M:576-678 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pzu_M] [1pzu_L] [1pzu_H] [1pzu_Y] [1pzu_I] [1pzu] [1pzu_Z] [1pzu_W] [1pzu_X] [1pzu_T] [1pzu_B] [1pzu_D] [1pzu_V]
  • SWISS-PROT database: [Q13469]
  • Domain organization of [NFAC2_HUMAN] by SWISSPFAM
  • Domain found in 1PZU: [IPT ] by SMART
    • Other resources with information on 1PZU
  • Community annotation for 1PZU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science