1Q02 Protein Binding date Jul 15, 2003
title Nmr Structure Of The Uba Domain Of P62 (Sqstm1)
authors B.Ciani, R.Layfield, J.R.Cavey, P.W.Sheppard, M.S.Searle
compound source
Molecule: Sequestosome 1
Chain: A
Fragment: Uba Domain
Synonym: Ubiquitin-Binding Protein P62, Sqstm1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl-10 Gold
Expression_system_plasmid: Pgex-4t-1
methodSolution NMR
Primary referenceStructure of the ubiquitin-associated domain of p62 (SQSTM1) and implications for mutations that cause Paget's disease of bone., Ciani B, Layfield R, Cavey JR, Sheppard PW, Searle MS, J Biol Chem 2003 Sep 26;278(39):37409-12. Epub 2003 Jul 11. PMID:12857745
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (359 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1Q02
  • Retrieve 1Q02 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Q02 from S2C, [Save to disk]
  • View 1Q02 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Q02
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1Q02, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1q02a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1q02 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1q02_A] [1q02]
  • SWISS-PROT database: [Q13501]
  • Domain organization of [SQSTM_HUMAN] by SWISSPFAM
  • Domain found in 1Q02: [UBA ] by SMART
  • Other resources with information on 1Q02
  • Community annotation for 1Q02 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science