1Q1U Hormone Growth Factor date Jul 22, 2003
title Crystal Structure Of Human Fhf1b (Fgf12b)
authors S.K.Olsen, M.Garbi, N.Zampieri, A.V.Eliseenkova, D.M.Ornitz, M.Goldfarb, M.Mohammadi
compound source
Molecule: Fibrobast Growth Factor Homologous Factor 1
Chain: A
Fragment: Residues 1-144
Synonym: Fgf-12; Fgf12b; Fibroblast Growth Factor 12 Isoform 2; Myocyte-Activating Factor; Fgf12 Protein;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
Other_details: T7 Promoter Driven Expression
symmetry Space Group: P 21 21 21
R_factor 0.223 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
30.624 58.853 65.415 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFibroblast growth factor (FGF) homologous factors share structural but not functional homology with FGFs., Olsen SK, Garbi M, Zampieri N, Eliseenkova AV, Ornitz DM, Goldfarb M, Mohammadi M, J Biol Chem 2003 Sep 5;278(36):34226-36. Epub 2003 Jun 17. PMID:12815063
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (1q1u.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 1Q1U
  • CSU: Contacts of Structural Units for 1Q1U
  • Likely Quarternary Molecular Structure file(s) for 1Q1U
  • Retrieve 1Q1U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Q1U from S2C, [Save to disk]
  • View 1Q1U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Q1U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1Q1U, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1q1ua_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1q1u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1q1u_A] [1q1u]
  • SWISS-PROT database: [P61328]
  • Domain organization of [FGF12_HUMAN] by SWISSPFAM
  • Domain found in 1Q1U: [FGF ] by SMART
  • Other resources with information on 1Q1U
  • Community annotation for 1Q1U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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