1Q1U Hormone Growth Factor date Jul 22, 2003
title Crystal Structure Of Human Fhf1b (Fgf12b)
authors S.K.Olsen, M.Garbi, N.Zampieri, A.V.Eliseenkova, D.M.Ornitz, M.Goldfarb, M.Mohammadi
compound source
Molecule: Fibrobast Growth Factor Homologous Factor 1
Chain: A
Fragment: Residues 1-144
Synonym: Fgf-12; Fgf12b; Fibroblast Growth Factor 12 Isoform 2; Myocyte-Activating Factor; Fgf12 Protein;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
Other_details: T7 Promoter Driven Expression
symmetry Space Group: P 21 21 21
R_factor 0.223 R_Free 0.240
length a length b length c angle alpha angle beta angle gamma
30.624 58.853 65.415 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand SO4 enzyme

Primary referenceFibroblast growth factor (FGF) homologous factors share structural but not functional homology with FGFs., Olsen SK, Garbi M, Zampieri N, Eliseenkova AV, Ornitz DM, Goldfarb M, Mohammadi M, J Biol Chem 2003 Sep 5;278(36):34226-36. Epub 2003 Jun 17. PMID:12815063
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (1q1u.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 1Q1U
  • CSU: Contacts of Structural Units for 1Q1U
  • Likely Quarternary Molecular Structure file(s) for 1Q1U
  • Retrieve 1Q1U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Q1U from S2C, [Save to disk]
  • View 1Q1U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Q1U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1Q1U, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1q1ua_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1q1u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1q1u_A] [1q1u]
  • SWISS-PROT database: [P61328]
  • Domain organization of [FGF12_HUMAN] by SWISSPFAM
  • Domain found in 1Q1U: [FGF ] by SMART
  • Other resources with information on 1Q1U
  • Community annotation for 1Q1U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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