1Q1V Dna Binding Protein date Jul 22, 2003
title Structure Of The Oncoprotein Dek: A Putative Dna-Binding Dom Related To The Winged Helix Motif
authors M.Devany, N.P.Kotharu, H.Matsuo
compound source
Molecule: Dek Protein
Chain: A
Fragment: Residues 309-378
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dek
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28c
methodSolution NMR
Primary referenceSolution NMR structure of the C-terminal domain of the human protein DEK., Devany M, Kotharu NP, Matsuo H, Protein Sci 2004 Aug;13(8):2252-9. Epub 2004 Jul 6. PMID:15238633
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (201 Kb) [Save to disk]
  • Biological Unit Coordinates (1q1v.pdb1.gz) 20 Kb
  • CSU: Contacts of Structural Units for 1Q1V
  • Original NMR restraints for 1Q1V from PDB
  • Retrieve 1Q1V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Q1V from S2C, [Save to disk]
  • View 1Q1V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Q1V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Q1V, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1q1va_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1q1v_A] [1q1v]
  • SWISS-PROT database: [P35659]
  • Domain organization of [DEK_HUMAN] by SWISSPFAM
  • Other resources with information on 1Q1V
  • Community annotation for 1Q1V at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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