1Q5K Transferase date Aug 08, 2003
title Crystal Structure Of Glycogen Synthase Kinase 3 In Complexed With Inhibitor
authors R.Bhat, Y.Xue, S.Berg, S.Hellberg, M.Ormo, Y.Nilsson, A.C.Radesater, E.Jerning, P.O.Markgren, T.Borgegard, M.Nylof, A.Gimenez-Cassina, F.Hernandez, J.J.Lucas, J.Diaz-Mido, J.Avila
compound source
Molecule: Glycogen Synthase Kinase-3 Beta
Chain: A, B
Synonym: Gsk-3 Beta
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gsk3b
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_cell: High Five Cells
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.222 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.584 84.913 178.424 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.94 Å
ligand TMU BindingDB enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1J1B, 1J1C
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • protein serine/threonine kin...
  • chemical synaptic transmissi...
  • positive regulation of mitoc...
  • beta-catenin destruction com...
  • Primary referenceStructural insights and biological effects of glycogen synthase kinase 3-specific inhibitor AR-A014418., Bhat R, Xue Y, Berg S, Hellberg S, Ormo M, Nilsson Y, Radesater AC, Jerning E, Markgren PO, Borgegard T, Nylof M, Gimenez-Cassina A, Hernandez F, Lucas JJ, Diaz-Nido J, Avila J, J Biol Chem. 2003 Nov 14;278(46):45937-45. Epub 2003 Aug 19. PMID:12928438
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (1q5k.pdb1.gz) 120 Kb
  • LPC: Ligand-Protein Contacts for 1Q5K
  • CSU: Contacts of Structural Units for 1Q5K
  • Likely Quarternary Molecular Structure file(s) for 1Q5K
  • Retrieve 1Q5K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Q5K from S2C, [Save to disk]
  • View 1Q5K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Q5K
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1Q5K, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1q5ka_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1q5kb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1q5k from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1q5k_B] [1q5k_A] [1q5k]
  • SWISS-PROT database: [P49841]
  • Domain organization of [GSK3B_HUMAN] by SWISSPFAM
  • Domain found in 1Q5K: [S_TKc ] by SMART
  • Other resources with information on 1Q5K
  • Community annotation for 1Q5K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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