1Q62 PKA double mutant model of PKB date
authors Gassel, M., Breitenlechner, C.B., Rueger, P., Jucknischke, U., Schneider, T., Huber, R., Bossemeyer, D., Engh, R.A.
compound source
symmetry
R_factor
R_Free 0.25198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand SEP, TPO enzyme
related structures by homologous chain: 1JLU, 1YDT
Gene
Ontology
ChainFunctionProcessComponent
A


I


Primary referenceMutants of protein kinase A that mimic the ATP-binding site of protein kinase B (AKT)., Gassel M, Breitenlechner CB, Ruger P, Jucknischke U, Schneider T, Huber R, Bossemeyer D, Engh RA, J Mol Biol 2003 Jun 20;329(5):1021-34. PMID:12798691
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (1q62.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 1Q62
  • CSU: Contacts of Structural Units for 1Q62
  • Likely Quarternary Molecular Structure file(s) for 1Q62
  • Structure Factors (144 Kb)
  • Retrieve 1Q62 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Q62 from S2C, [Save to disk]
  • Re-refined 1q62 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Q62 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Q62
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1Q62, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1q62a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1q62 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1q62_I] [1q62] [1q62_A]
  • SWISS-PROT database: [P00517]
  • Domain organization of [KAPCA_BOVIN] by SWISSPFAM
  • Domains found in 1Q62: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 1Q62
  • Community annotation for 1Q62 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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