1Q96 Rna date Aug 22, 2003
title Crystal Structure Of A Mutant Of The Sarcinricin Domain Fro Rrna
authors C.C.Correll, J.Beneken, M.J.Plantinga, M.Lubbers, Y.L.Chan
compound source
Molecule: Sarcinricin 28s Rrna
Chain: A, B, C
Fragment: Sarcinricin Domain
Engineered: Yes
Mutation: Yes
Synthetic: Yes
Other_details: The 28s Ribosomal Rna Was Chemically Synthes Sequence Of The 28s Ribosomal Rna Is Naturally Found In Rat Rattus (Rat).
symmetry Space Group: P 43 2 2
R_factor 0.201 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.246 42.246 336.915 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand SO4 enzyme
Primary referenceThe common and the distinctive features of the bulged-G motif based on a 1.04 A resolution RNA structure., Correll CC, Beneken J, Plantinga MJ, Lubbers M, Chan YL, Nucleic Acids Res 2003 Dec 1;31(23):6806-18. PMID:14627814
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (1q96.pdb1.gz) 14 Kb
  • Biological Unit Coordinates (1q96.pdb2.gz) 15 Kb
  • Biological Unit Coordinates (1q96.pdb3.gz) 15 Kb
  • LPC: Ligand-Protein Contacts for 1Q96
  • CSU: Contacts of Structural Units for 1Q96
  • Likely Quarternary Molecular Structure file(s) for 1Q96
  • Structure Factors (372 Kb)
  • Retrieve 1Q96 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Q96 from S2C, [Save to disk]
  • Re-refined 1q96 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Q96 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Q96
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1Q96, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1q96] [1q96_B] [1q96_C] [1q96_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1Q96
  • Community annotation for 1Q96 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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