1QBI Oxidoreductase date Apr 22, 1999
title Soluble Quinoprotein Glucose Dehydrogenase From Acinetobacte Calcoaceticus
authors A.Oubrie, H.J.Rozeboom, K.H.Kalk, J.A.Duine, B.W.Dijkstra
compound source
Molecule: Soluble Quinoprotein Glucose Dehydrogenase
Chain: A, B
Ec: 1.1.99.17
Engineered: Yes
Organism_scientific: Acinetobacter Calcoaceticus
Organism_taxid: 471
Cellular_location: Periplasm
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.165 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.148 92.100 84.910 90.00 105.17 90.00
method X-Ray Diffractionresolution 1.72 Å
ligand CA, GOL, PT enzyme Oxidoreductase E.C.1.1.99.17 BRENDA
related structures by homologous chain: 1CQ1, 1CRU
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe 1.7 A crystal structure of the apo form of the soluble quinoprotein glucose dehydrogenase from Acinetobacter calcoaceticus reveals a novel internal conserved sequence repeat., Oubrie A, Rozeboom HJ, Kalk KH, Duine JA, Dijkstra BW, J Mol Biol 1999 Jun 4;289(2):319-33. PMID:10366508
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk]
  • Biological Unit Coordinates (1qbi.pdb1.gz) 159 Kb
  • LPC: Ligand-Protein Contacts for 1QBI
  • CSU: Contacts of Structural Units for 1QBI
  • Likely Quarternary Molecular Structure file(s) for 1QBI
  • Structure Factors (708 Kb)
  • Retrieve 1QBI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QBI from S2C, [Save to disk]
  • Re-refined 1qbi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1QBI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1QBI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QBI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qbia_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1qbib_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qbi] [1qbi_B] [1qbi_A]
  • SWISS-PROT database: [P13650]
  • Domain organization of [DHGB_ACICA] by SWISSPFAM
  • Other resources with information on 1QBI
  • Community annotation for 1QBI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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