1QC5 I Domain from Integrin Alpha1-Beta1 date
authors Deivanayagam, C.C., Narayana, S.V.
compound source
symmetry
R_factor
R_Free 0.2430000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand MG enzyme
related structures by homologous chain: 1CK4, 1PT6
Primary referenceTrench-shaped binding sites promote multiple classes of interactions between collagen and the adherence receptors, alpha(1)beta(1) integrin and Staphylococcus aureus cna MSCRAMM., Rich RL, Deivanayagam CC, Owens RT, Carson M, Hook A, Moore D, Symersky J, Yang VW, Narayana SV, Hook M, J Biol Chem 1999 Aug 27;274(35):24906-13. PMID:10455165
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (1qc5.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 1QC5
  • CSU: Contacts of Structural Units for 1QC5
  • Likely Quarternary Molecular Structure file(s) for 1QC5
  • Retrieve 1QC5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QC5 from S2C, [Save to disk]
    • View 1QC5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1QC5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QC5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qc5a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1qc5b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qc5_A] [1qc5_B] [1qc5]
  • SWISS-PROT database: [P56199]
  • Belongs to the integrin (integrin) family according to TCDB.
  • Domain organization of [ITA1_HUMAN] by SWISSPFAM
  • Domain found in 1QC5: [VWA ] by SMART
    • Other resources with information on 1QC5
  • Community annotation for 1QC5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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