1QCE Viral Protein date Apr 30, 1999
title Solution Nmr Structure Of Ectodomain Of Siv Gp41, Restrained Regularized Mean Structure Plus 29 Simulated Annealing Stru
authors G.M.Clore
compound source
Molecule: Protein (Gp41)
Chain: A, B, C
Fragment: Ectodomain, Residues 27 - 149, Numbered 1 - 123
Organism_scientific: Simian Immunodeficiency Virus
Organism_taxid: 11723
Strain: Sootey Mangabey
methodSolution NMR
A, C, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3424 Kb) [Save to disk]
  • Biological Unit Coordinates (1qce.pdb1.gz) 116 Kb
  • CSU: Contacts of Structural Units for 1QCE
  • Retrieve 1QCE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QCE from S2C, [Save to disk]
  • View 1QCE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1QCE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1QCE, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qcea_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1qceb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1qcec_, region C [Jmol] [rasmolscript] [script source]
  • Fold representative 1qce from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qce] [1qce_A] [1qce_B] [1qce_C]
  • SWISS-PROT database: [Q88031]
  • Domain organization of [Q88031_SIVCZ] by SWISSPFAM
  • Other resources with information on 1QCE
  • Community annotation for 1QCE at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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