1QCV Electron Transport date May 10, 1999
title Rubredoxin Variant (Pfrd-Xc4) Folds Without Iron
authors P.Strop, S.L.Mayo
compound source
Molecule: Protein (Rubredoxin Variant Pfrd-Xc4)
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Pyrococcus Furiosus
Organism_taxid: 2261
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
related structures by homologous chain: 1SPW
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


  • Primary referenceContribution of surface salt bridges to protein stability., Strop P, Mayo SL, Biochemistry 2000 Feb 15;39(6):1251-5. PMID:10684603
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (391 Kb) [Save to disk]
  • Biological Unit Coordinates (1qcv.pdb1.gz) 14 Kb
  • CSU: Contacts of Structural Units for 1QCV
  • Retrieve 1QCV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QCV from S2C, [Save to disk]
  • View 1QCV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1QCV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1QCV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qcva_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1qcv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qcv_A] [1qcv]
  • SWISS-PROT database: [P24297]
  • Domain organization of [RUBR_PYRFU] by SWISSPFAM
  • Other resources with information on 1QCV
  • Community annotation for 1QCV at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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