1QGM Cytokine date May 01, 1999
title The Solution Structure Of A 30 Residue Amino-Terminal Domain Carp Granulin-1 Protein.
authors W.F.Vranken, P.Xu, F.Ni
compound source
Molecule: Protein (Amino-Terminal Carp Granulin-1)
Chain: A
Fragment: Amino-Terminal Fragment
Engineered: Yes
Mutation: Yes
 Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Of The Peptide Is Naturally Found In Cyprinus Carpio (Carp)
methodSolution NMR
related structures by homologous chain: 1I8X
Primary referenceA 30-residue fragment of the carp granulin-1 protein folds into a stack of two beta-hairpins similar to that found in the native protein., Vranken WF, Chen ZG, Xu P, James S, Bennett HP, Ni F, J Pept Res 1999 May;53(5):590-7. PMID:10424355
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (1qgm.pdb1.gz) 7 Kb
  • CSU: Contacts of Structural Units for 1QGM
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1QGM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QGM from S2C, [Save to disk]
    • View 1QGM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1QGM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QGM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qgma_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qgm_A] [1qgm]
  • SWISS-PROT database: [P81013]
  • Domain organization of [GRN1_CYPCA] by SWISSPFAM
    • Other resources with information on 1QGM
  • Community annotation for 1QGM at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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