1QIO	Hydrolase	date	Jun 14, 1999
title	Specific Chemical And Structural Damage Caused By Intense Sy Radiation To Hen Egg White Lysozyme
authors	G.Kryger, M.Weik, R.B.Ravelli
compound		source
Molecule: Lysozyme Chain: A Ec: 3.2.1.17		Organism_scientific: Gallus Gallus Organism_common: Chicken Organism_taxid: 9031 Cellular_location: Egg White
symmetry	Space Group: P 43 21 2	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 76.929 76.929 37.207 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.20 Å
ligand	CL, NA	enzyme	Hydrolase E.C.3.2.1.17 BRENDA
related structures	by homologous chain: 135L, 1LJN
Gene Ontology	Chain Function Process Component A
Primary reference	Specific chemical and structural damage to proteins produced by synchrotron radiation., Weik M, Ravelli RB, Kryger G, McSweeney S, Raves ML, Harel M, Gros P, Silman I, Kroon J, Sussman JL, Proc Natl Acad Sci U S A 2000 Jan 18;97(2):623-8. PMID:10639129

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk] Biological Unit Coordinates (1qio.pdb1.gz) 44 Kb LPC: Ligand-Protein Contacts for 1QIO CSU: Contacts of Structural Units for 1QIO Likely Quarternary Molecular Structure file(s) for 1QIO Structure Factors (287 Kb) Retrieve 1QIO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1QIO from S2C, [Save to disk] Re-refined 1qio structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1QIO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1QIO

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1QIO from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1QIO, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1qioa_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1qio] [1qio_A] SWISS-PROT database: [P00698] Domain organization of [LYSC_CHICK] by SWISSPFAM Domain found in 1QIO: [LYZ1 ] by SMART

Other resources with information on 1QIO

Community annotation for 1QIO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 1QIO from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

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