1QMR BIRCH POLLEN ALLERGEN BET V 1 MUTANT N28T, K32Q, E45S, P108G date
authors Henriksen, A., Holm, J.O., Spangfort, M.D., Gajhede, M.
compound source
symmetry
R_factor
R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.15
related structures by homologous chain: 1BV1, 1FSK
Gene
Ontology
ChainFunctionProcessComponent
A
  • protein phosphatase inhibito...


    • Primary referenceAllergy vaccine engineering: epitope modulation of recombinant Bet v 1 reduces IgE binding but retains protein folding pattern for induction of protective blocking-antibody responses., Holm J, Gajhede M, Ferreras M, Henriksen A, Ipsen H, Larsen JN, Lund L, Jacobi H, Millner A, Wurtzen PA, Spangfort MD, J Immunol. 2004 Oct 15;173(8):5258-67. PMID:15470071
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (1qmr.pdb1.gz) 52 Kb
  • CSU: Contacts of Structural Units for 1QMR
  • Likely Quarternary Molecular Structure file(s) for 1QMR
  • Structure Factors (70 Kb)
  • Retrieve 1QMR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QMR from S2C, [Save to disk]
  • Re-refined 1qmr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1QMR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1QMR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QMR, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qmra_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qmr] [1qmr_A]
  • SWISS-PROT database: [P15494]
  • Domain organization of [BEV1A_BETVE] by SWISSPFAM
    • Other resources with information on 1QMR
  • Community annotation for 1QMR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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