1QO8 Oxidoreductase date Nov 04, 1999
title The Structure Of The Open Conformation Of A Flavocytochrome Fumarate Reductase
authors V.Bamford, P.S.Dobbin, D.J.Richardson, A.M.Hemmings
compound source
Molecule: Flavocytochrome C3 Fumarate Reductase
Chain: A, D
Ec: 1.3.99.1
 Organism_scientific: Shewanella Frigidimarina
Organism_taxid: 56812
Strain: Ncimb400
symmetry Space Group: P 21 21 21
R_factor 0.225 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.770 109.690 227.320 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand FAD, HEM enzyme Oxidoreductase E.C.1.3.99.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D


Primary referenceOpen conformation of a flavocytochrome c3 fumarate reductase., Bamford V, Dobbin PS, Richardson DJ, Hemmings AM, Nat Struct Biol 1999 Dec;6(12):1104-7. PMID:10581549
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk]
  • Biological Unit Coordinates (1qo8.pdb1.gz) 191 Kb
  • LPC: Ligand-Protein Contacts for 1QO8
  • CSU: Contacts of Structural Units for 1QO8
  • Likely Quarternary Molecular Structure file(s) for 1QO8
  • Retrieve 1QO8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QO8 from S2C, [Save to disk]
    • View 1QO8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1QO8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QO8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qo8a2, region A:103-359,A:506-565 [Jmol] [rasmolscript] [script source]
        - Domain d1qo8a1, region A:2-102 [Jmol] [rasmolscript] [script source]
        - Domain d1qo8a3, region A:360-505 [Jmol] [rasmolscript] [script source]
        - Domain d1qo8d2, region D:103-359,D:506-565 [Jmol] [rasmolscript] [script source]
        - Domain d1qo8d1, region D:2-102 [Jmol] [rasmolscript] [script source]
        - Domain d1qo8d3, region D:360-505 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qo8_D] [1qo8] [1qo8_A]
  • SWISS-PROT database: [Q9Z4P0]
  • Domain organization of [FRD2_SHEFN] by SWISSPFAM
    • Other resources with information on 1QO8
  • Community annotation for 1QO8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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