1QRZ Hydrolase date Jun 16, 1999
title Catalytic Domain Of Plasminogen
authors E.Peisach, J.Wang, T.De Los Santos, E.Reich, D.Ringe
compound source
Molecule: Plasminogen
Chain: A, B, C, D
Fragment: Catalytic Domain
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system_common: Insect
symmetry Space Group: P 1 21 1
R_factor 0.235 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.658 73.575 81.363 90.00 108.73 90.00
method X-Ray Diffractionresolution 2.00 Å
related structures by homologous chain: 1DDJ, 1RJX
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of the proenzyme domain of plasminogen., Peisach E, Wang J, de los Santos T, Reich E, Ringe D, Biochemistry. 1999 Aug 24;38(34):11180-8. PMID:10460175
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk]
  • Biological Unit Coordinates (1qrz.pdb1.gz) 42 Kb
  • Biological Unit Coordinates (1qrz.pdb2.gz) 42 Kb
  • Biological Unit Coordinates (1qrz.pdb3.gz) 42 Kb
  • Biological Unit Coordinates (1qrz.pdb4.gz) 42 Kb
  • CSU: Contacts of Structural Units for 1QRZ
  • Likely Quarternary Molecular Structure file(s) for 1QRZ
  • Structure Factors (449 Kb)
  • Retrieve 1QRZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QRZ from S2C, [Save to disk]
  • Re-refined 1qrz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1QRZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1QRZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QRZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qrza_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1qrzb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1qrzc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1qrzd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qrz_D] [1qrz_A] [1qrz] [1qrz_B] [1qrz_C]
  • SWISS-PROT database: [P00747]
  • Domain organization of [PLMN_HUMAN] by SWISSPFAM
  • Domain found in 1QRZ: [Tryp_SPc ] by SMART
  • Other resources with information on 1QRZ
  • Community annotation for 1QRZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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