1QSJ Immune System date Jun 22, 1999
title N-Terminally Truncated C3dg Fragment
authors G.Zanotti, A.Bassetto, R.Battistutta, M.Stoppini, C.Folli, R.Bern
compound source
Molecule: Complement C3 Precursor
Chain: A, B, C, D
Fragment: N-Terminally Truncated C3dg Fragment
Synonym: C3dg
Mutation: Yes
 Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Organ: Plasma
symmetry Space Group: P 21 21 21
R_factor 0.212 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.620 99.930 114.880 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
related structures by homologous chain: 1C3D, 1GHQ
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure at 1.44 A resolution of an N-terminally truncated form of the rat serum complement C3d fragment., Zanotti G, Bassetto A, Battistutta R, Folli C, Arcidiaco P, Stoppini M, Berni R, Biochim Biophys Acta 2000 May 23;1478(2):232-8. PMID:10825534
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (186 Kb) [Save to disk]
  • Biological Unit Coordinates (1qsj.pdb1.gz) 90 Kb
  • Biological Unit Coordinates (1qsj.pdb2.gz) 91 Kb
  • CSU: Contacts of Structural Units for 1QSJ
  • Likely Quarternary Molecular Structure file(s) for 1QSJ
  • Structure Factors (462 Kb)
  • Retrieve 1QSJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QSJ from S2C, [Save to disk]
  • Re-refined 1qsj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1QSJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1QSJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QSJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qsja_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1qsjb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1qsjc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1qsjd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qsj_C] [1qsj_D] [1qsj] [1qsj_B] [1qsj_A]
  • SWISS-PROT database: [P01026]
  • Domain organization of [CO3_RAT] by SWISSPFAM
    • Other resources with information on 1QSJ
  • Community annotation for 1QSJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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