1QTY Hormone Growth Factor Receptor date Jun 29, 1999
title Vascular Endothelial Growth Factor In Complex With Domain 2 Of The Flt-1 Receptor
authors C.Wiesmann, A.M.De Vos
compound source
Molecule: Vascular Endothelial Growth Factor
Chain: V, W, R, S
Fragment: Receptor Binding Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Fms-Like Tyrosine Kinase 1
Chain: X, Y, T, U
Fragment: Domain 2
Synonym: Flt-1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.233 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.310 67.010 120.840 90.00 118.15 90.00
method X-Ray Diffractionresolution 2.70 Å
related structures by homologous chain: 1QSZ, 1RV6, 1TZH, 1TZI
Gene
Ontology
ChainFunctionProcessComponent
S, W, R, V


T, X, Y, U


Primary referenceSolution structure of the VEGF-binding domain of Flt-1: comparison of its free and bound states., Starovasnik MA, Christinger HW, Wiesmann C, Champe MA, de Vos AM, Skelton NJ, J Mol Biol 1999 Oct 29;293(3):531-44. PMID:10543948
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (1qty.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (1qty.pdb2.gz) 64 Kb
  • Biological Unit Coordinates (1qty.pdb3.gz) 125 Kb
  • CSU: Contacts of Structural Units for 1QTY
  • Likely Quarternary Molecular Structure file(s) for 1QTY
  • Retrieve 1QTY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QTY from S2C, [Save to disk]
  • View 1QTY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1QTY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1QTY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qtyr_, region R [Jmol] [rasmolscript] [script source]
        - Domain d1qtys_, region S [Jmol] [rasmolscript] [script source]
        - Domain d1qtyt_, region T [Jmol] [rasmolscript] [script source]
        - Domain d1qtyu_, region U [Jmol] [rasmolscript] [script source]
        - Domain d1qtyv_, region V [Jmol] [rasmolscript] [script source]
        - Domain d1qtyw_, region W [Jmol] [rasmolscript] [script source]
        - Domain d1qtyx_, region X [Jmol] [rasmolscript] [script source]
        - Domain d1qtyy_, region Y [Jmol] [rasmolscript] [script source]
  • Fold representative 1qty from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qty_X] [1qty_W] [1qty_V] [1qty_Y] [1qty_R] [1qty] [1qty_T] [1qty_S] [1qty_U]
  • SWISS-PROT database: [P15692] [P17948]
  • Domain organization of [VEGFA_HUMAN] [VGFR1_HUMAN] by SWISSPFAM
  • Domains found in 1QTY: [IG] [PDGF ] by SMART
  • Other resources with information on 1QTY
  • Community annotation for 1QTY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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