1QX4 Oxidoreductase date Sep 04, 2003
title Structrue Of S127p Mutant Of Cytochrome B5 Reductase
authors M.C.Bewley, C.A.Davis, C.C.Marohnic, D.Taormina, M.J.Barber
compound source
Molecule: Nadh-Cytochrome B5 Reductase
Chain: A, B
Ec: 1.6.2.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Dia1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codon-Plus (De3)Ril
symmetry Space Group: P 1 21 1
R_factor 0.207 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.236 48.004 77.247 90.00 107.69 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand FAD enzyme Oxidoreductase E.C.1.6.2.2 BRENDA
related structures by homologous chain: 1I7P, 1UMK
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structure of the S127P mutant of cytochrome b5 reductase that causes methemoglobinemia shows the AMP moiety of the flavin occupying the substrate binding site., Bewley MC, Davis CA, Marohnic CC, Taormina D, Barber MJ, Biochemistry 2003 Nov 18;42(45):13145-51. PMID:14609324
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (1qx4.pdb1.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 1QX4
  • CSU: Contacts of Structural Units for 1QX4
  • Likely Quarternary Molecular Structure file(s) for 1QX4
  • Retrieve 1QX4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QX4 from S2C, [Save to disk]
  • View 1QX4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1QX4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QX4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qx4a2, region A:154-300 [Jmol] [rasmolscript] [script source]
        - Domain d1qx4a1, region A:33-153 [Jmol] [rasmolscript] [script source]
        - Domain d1qx4b2, region B:154-300 [Jmol] [rasmolscript] [script source]
        - Domain d1qx4b1, region B:33-153 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qx4] [1qx4_A] [1qx4_B]
  • SWISS-PROT database: [P20070]
  • Domain organization of [NB5R3_RAT] by SWISSPFAM
  • Other resources with information on 1QX4
  • Community annotation for 1QX4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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