1QY4 Crystal structure of phosphoglucose isomerase from Pyrococcus furiosus in complex with gluconate 6-phosphate date
authors Swan, M.K., Solomons, J.T.G., Beeson, C.C., Hansen, T., Schonheit, P., Davies, C.
compound source
symmetry
R_factor
R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand 6PG, NI enzyme
related structures by homologous chain: 1J3Q, 1QXJ
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural evidence for a hydride transfer mechanism of catalysis in phosphoglucose isomerase from Pyrococcus furiosus., Swan MK, Solomons JT, Beeson CC, Hansen T, Schonheit P, Davies C, J Biol Chem 2003 Nov 21;278(47):47261-8. Epub 2003 Sep 11. PMID:12970347
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (1qy4.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 1QY4
  • CSU: Contacts of Structural Units for 1QY4
  • Likely Quarternary Molecular Structure file(s) for 1QY4
  • Structure Factors (339 Kb)
  • Retrieve 1QY4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QY4 from S2C, [Save to disk]
  • Re-refined 1qy4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1QY4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1QY4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QY4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qy4a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1qy4b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qy4_B] [1qy4] [1qy4_A]
  • SWISS-PROT database: [P83194]
  • Domain organization of [G6PI_PYRFU] by SWISSPFAM
  • Other resources with information on 1QY4
  • Community annotation for 1QY4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science