1QZ6 Structural Protein date Sep 15, 2003
title Structure Of Rabbit Actin In Complex With Jaspisamide A
authors V.A.Klenchin, J.S.Allingham, R.King, J.Tanaka, G.Marriott, I.Raym
compound source
Molecule: Actin, Alpha Skeletal Muscle
Chain: A
Synonym: Alpha-Actin 1
 Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
symmetry Space Group: P 1 21 1
R_factor 0.165 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.370 75.958 67.494 90.00 99.07 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand ATP, CA, FRU, GLC, HIC, JAS enzyme
related structures by homologous chain: 1D4X, 1S22
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTrisoxazole macrolide toxins mimic the binding of actin-capping proteins to actin., Klenchin VA, Allingham JS, King R, Tanaka J, Marriott G, Rayment I, Nat Struct Biol 2003 Dec;10(12):1058-63. PMID:14578936
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (1qz6.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 1QZ6
  • CSU: Contacts of Structural Units for 1QZ6
  • Likely Quarternary Molecular Structure file(s) for 1QZ6
  • Structure Factors (258 Kb)
  • Retrieve 1QZ6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QZ6 from S2C, [Save to disk]
  • Re-refined 1qz6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1QZ6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1QZ6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QZ6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qz6a2, region A:147-375 [Jmol] [rasmolscript] [script source]
        - Domain d1qz6a1, region A:5-146 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qz6] [1qz6_A]
  • SWISS-PROT database: [P68135]
  • Domain organization of [ACTS_RABIT] by SWISSPFAM
  • Domain found in 1QZ6: [ACTIN ] by SMART
    • Other resources with information on 1QZ6
  • Community annotation for 1QZ6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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