1QZJ Transferase date Sep 17, 2003
title Inactive Wild Type Human C-Kit Kinase Domain Molecular Model
authors J.Vendome, M.Le Bret
compound source
Molecule: Maststem Cell Growth Factor Receptor
Chain: A
Fragment: Kinase Domain
Synonym: Scfr, Proto-Oncogene Tyrosine-Protein Kinase Kit, C-Kit, Cd117 Antigen;
Ec: 2.7.1.112
 Organism_scientific: Homo Sapiens
Organism_common: Human
methodTheoretical Model
ligand
enzyme Transferase E.C.2.7.1.112 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1QZJ
    • View 1QZJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 1QZJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 1qzj from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • SWISS-PROT database: [P10721]
  • Domain organization of [KIT_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1QZJ with the sequences similar proteins can be viewed for 1QZJ's classification [KIT_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [KIT_HUMAN] at ProtoMap. Click on the Cluster number.
    • Other resources with information on 1QZJ
  • Community annotation for 1QZJ at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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