1R0F Electron Transport date Sep 22, 2003
title Gallium-Substituted Rubredoxin
authors M.Maher, M.Cross, M.C.J.Wilce, J.M.Guss, A.G.Wedd
compound source
Molecule: Rubredoxin
Chain: A
Synonym: Rd
Engineered: Yes
 Organism_scientific: Clostridium Pasteurianum
Organism_taxid: 1501
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk223-3
symmetry Space Group: H 3
R_factor 0.156 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.285 64.285 32.848 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.60 Å
ligand GA enzyme
related structures by homologous chain: 1C09, 1R0G
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


    • Primary referenceMetal-substituted derivatives of the rubredoxin from Clostridium pasteurianum., Maher M, Cross M, Wilce MC, Guss JM, Wedd AG, Acta Crystallogr D Biol Crystallogr 2004 Feb;60(Pt 2):298-303. Epub 2004, Jan 23. PMID:14747706
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (14 Kb) [Save to disk]
  • Biological Unit Coordinates (1r0f.pdb1.gz) 9 Kb
  • LPC: Ligand-Protein Contacts for 1R0F
  • CSU: Contacts of Structural Units for 1R0F
  • Likely Quarternary Molecular Structure file(s) for 1R0F
  • Structure Factors (49 Kb)
  • Retrieve 1R0F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1R0F from S2C, [Save to disk]
  • Re-refined 1r0f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1R0F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1R0F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1R0F, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1r0fa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1r0f] [1r0f_A]
  • SWISS-PROT database: [P00268]
  • Domain organization of [RUBR_CLOPA] by SWISSPFAM
    • Other resources with information on 1R0F
  • Community annotation for 1R0F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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