1R0P Transferase date Sep 22, 2003
title Crystal Structure Of The Tyrosine Kinase Domain Of The Hepat Growth Factor Receptor C-Met In Complex With The Microbial K-252a
authors N.Schiering, S.Knapp, M.Marconi, M.M.Flocco, J.Cui, R.Perego, L.Ru C.Cristiani
compound source
Molecule: Hepatocyte Growth Factor Receptor
Chain: A
Fragment: Tyrosine Kinase Domain
Synonym: Met Proto-Oncogene Tyrosine Kinase, C-Met, Hgf Rec Hgf-Sf Receptor;
Ec: 2.7.1.112
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Met
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: High-Five
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pvl1393
symmetry Space Group: P 21 21 21
R_factor 0.170 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.969 46.247 158.379 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand KSA enzyme Transferase E.C.2.7.1.112 BRENDA
related structures by homologous chain: 1R1W
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the tyrosine kinase domain of the hepatocyte growth factor receptor c-Met and its complex with the microbial alkaloid K-252a., Schiering N, Knapp S, Marconi M, Flocco MM, Cui J, Perego R, Rusconi L, Cristiani C, Proc Natl Acad Sci U S A 2003 Oct 28;100(22):12654-9. Epub 2003 Oct 14. PMID:14559966
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (1r0p.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 1R0P
  • CSU: Contacts of Structural Units for 1R0P
  • Likely Quarternary Molecular Structure file(s) for 1R0P
  • Retrieve 1R0P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1R0P from S2C, [Save to disk]
  • View 1R0P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1R0P
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1R0P, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1r0pa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1r0p from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1r0p_A] [1r0p]
  • SWISS-PROT database: [P08581]
  • Domain organization of [MET_HUMAN] by SWISSPFAM
  • Domain found in 1R0P: [TyrKc ] by SMART
  • Other resources with information on 1R0P
  • Community annotation for 1R0P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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