1R1P Peptide Binding Protein date Sep 24, 2003
title Structural Basis For Differential Recognition Of Tyrosine Phosphorylated Sites In The Linker For Activation Of T Cell The Adaptor Protein Gads
authors S.Cho, R.A.Mariuzza
compound source
Molecule: Grb2-Related Adaptor Protein 2
Chain: A, B, C, D
Fragment: Gads-Sh2 Domain
Synonym: Gads Protein, Growth Factor Receptor Binding Prote Grb-2-Like Protein, Grb2l, Hematopoietic Cell-Associated Ad Protein Grpl, Grb-2-Related Monocytic Adapter Protein, Mono Adapter, Mona, Adapter Protein Grid;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Gads
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Lat Py171 Peptide
Chain: E, F, G, H
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized
symmetry Space Group: P 41 21 2
R_factor 0.196 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.307 90.307 145.959 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ACE, PTR, SO4 enzyme
related structures by homologous chain: 1R1Q, 1R1S
Primary referenceStructural basis for differential recognition of tyrosine-phosphorylated sites in the linker for activation of T cells (LAT) by the adaptor Gads., Cho S, Velikovsky CA, Swaminathan CP, Houtman JC, Samelson LE, Mariuzza RA, EMBO J 2004 Apr 7;23(7):1441-51. Epub 2004 Mar 18. PMID:15029250
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (1r1p.pdb1.gz) 21 Kb
  • Biological Unit Coordinates (1r1p.pdb2.gz) 21 Kb
  • Biological Unit Coordinates (1r1p.pdb3.gz) 22 Kb
  • Biological Unit Coordinates (1r1p.pdb4.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 1R1P
  • CSU: Contacts of Structural Units for 1R1P
  • Likely Quarternary Molecular Structure file(s) for 1R1P
  • Retrieve 1R1P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1R1P from S2C, [Save to disk]
  • View 1R1P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1R1P
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1R1P, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1r1pa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1r1pb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1r1pc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1r1pd_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1r1p from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1r1p_E] [1r1p_C] [1r1p_G] [1r1p_B] [1r1p_A] [1r1p] [1r1p_H] [1r1p_D] [1r1p_F]
  • SWISS-PROT database: [O89100]
  • Domain organization of [GRAP2_MOUSE] by SWISSPFAM
  • Domain found in 1R1P: [SH2 ] by SMART
  • Other resources with information on 1R1P
  • Community annotation for 1R1P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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