1R2P Rna date Sep 29, 2003
title Solution Structure Of Domain 5 From The Ai5(Gamma) Group II
authors R.K.O.Sigel, D.G.Sashital, D.L.Abramovitz, A.G.Palmer Iii, S.E.B A.M.Pyle
compound source
Molecule: 34-Mer
Chain: A
Fragment: Domain 5 Of The Ai5(Gamma) Group II Intron
Engineered: Yes
 Synthetic: Yes
Other_details: Sequence Occurs Naturally In Saccharomyces C (Baker'S Yeast) And Was Synthesized In Vitro Using T7 Rna P And Synthetic Dna Oligonucleotides.
methodSolution NMR
Primary referenceSolution structure of domain 5 of a group II intron ribozyme reveals a new RNA motif., Sigel RK, Sashital DG, Abramovitz DL, Palmer AG, Butcher SE, Pyle AM, Nat Struct Mol Biol. 2004 Feb;11(2):187-92. Epub 2004 Jan 25. PMID:14745440
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk]
  • Biological Unit Coordinates (1r2p.pdb1.gz) 18 Kb
  • CSU: Contacts of Structural Units for 1R2P
  • Original NMR restraints for 1R2P from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1R2P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1R2P from S2C, [Save to disk]
    • View 1R2P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1R2P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1R2P, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1r2p_A] [1r2p]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1R2P
  • Community annotation for 1R2P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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