1R2W Rna Binding Protein Rna date Sep 30, 2003
title Coordinates Of L11 With 58nts Of 23s Rrna Fitted Into The Cr Of The 70s Ribosome
authors M.Valle, A.Zavialov, W.Li, S.M.Stagg, J.Sengupta, R.C.Nielsen, P.N S.C.Harvey, M.Ehrenberg, J.Frank
compound source
Molecule: 58nts Of 23s Rrna
Chain: C
Engineered: Yes
 Synthetic: Yes

Molecule: 50s Ribosomal Protein L11
Chain: A
Organism_scientific: Thermotoga Maritima
Organism_taxid: 2336
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 9.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIncorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy., Valle M, Zavialov A, Li W, Stagg SM, Sengupta J, Nielsen RC, Nissen P, Harvey SC, Ehrenberg M, Frank J, Nat Struct Biol 2003 Nov;10(11):899-906. Epub 2003 Oct 19. PMID:14566331
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (7 Kb) [Save to disk]
  • Biological Unit Coordinates (1r2w.pdb1.gz) 5 Kb
  • CSU: Contacts of Structural Units for 1R2W
  • Likely Quarternary Molecular Structure file(s) for 1R2W
  • Retrieve 1R2W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1R2W from S2C, [Save to disk]
    • View 1R2W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1R2W
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1R2W, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1r2wa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1r2wc_, region C [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1r2w_A] [1r2w_C] [1r2w]
  • SWISS-PROT database: [P29395]
  • Domain organization of [RL11_THEMA] by SWISSPFAM
  • Domain found in 1R2W: [RL11 ] by SMART
    • Other resources with information on 1R2W
  • Community annotation for 1R2W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science