1R2X Rna Binding Protein Rna date Sep 30, 2003
title Coordinates Of L11 With 58nts Of 23s Rrna Fitted Into The Cr Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s Ribosom
authors M.Valle, A.Zavialov, W.Li, S.M.Stagg, J.Sengupta, R.C.Nielsen, P.N S.C.Harvey, M.Ehrenberg, J.Frank
compound source
Molecule: 58nts Of 23s Rrna
Chain: C
Engineered: Yes
 Synthetic: Yes

Molecule: 50s Ribosomal Protein L11
Chain: A
Organism_scientific: Thermotoga Maritima
Organism_taxid: 2336
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 9.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIncorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy., Valle M, Zavialov A, Li W, Stagg SM, Sengupta J, Nielsen RC, Nissen P, Harvey SC, Ehrenberg M, Frank J, Nat Struct Biol 2003 Nov;10(11):899-906. Epub 2003 Oct 19. PMID:14566331
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (7 Kb) [Save to disk]
  • Biological Unit Coordinates (1r2x.pdb1.gz) 5 Kb
  • CSU: Contacts of Structural Units for 1R2X
  • Likely Quarternary Molecular Structure file(s) for 1R2X
  • Retrieve 1R2X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1R2X from S2C, [Save to disk]
    • View 1R2X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1R2X
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1R2X, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1r2xa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1r2xc_, region C [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1r2x] [1r2x_C] [1r2x_A]
  • SWISS-PROT database: [P29395]
  • Domain organization of [RL11_THEMA] by SWISSPFAM
  • Domain found in 1R2X: [RL11 ] by SMART
    • Other resources with information on 1R2X
  • Community annotation for 1R2X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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