1R2Z Hydrolase Dna date Sep 30, 2003
title Mutm (Fpg) Bound To 5,6-Dihydrouracil (Dhu) Containing Dna
authors J.C.Fromme, G.L.Verdine
compound source
Molecule: 5'-D(Apgpgptpapgpapcpcptpgpgpapcpg
Chain: B
Engineered: Yes
Synthetic: Yes

Molecule: 5'-D(Tpgpcpgptpcpcpap(Dhu)Pgptpcptp 3';
Chain: C
Engineered: Yes

Synthetic: Yes

Molecule: Mutm
Chain: A
Synonym: Fpg
Engineered: Yes
Mutation: Yes

Organism_scientific: Geobacillus Stearothermophilus
Organism_taxid: 1422
Gene: Mutm
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24b
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.591 94.226 102.180 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.63 Å
ligand UMP, ZN enzyme
related structures by homologous chain: 1L1Z
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDNA lesion recognition by the bacterial repair enzyme MutM., Fromme JC, Verdine GL, J Biol Chem 2003 Dec 19;278(51):51543-8. Epub 2003 Oct 1. PMID:14525999
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (1r2z.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 1R2Z
  • CSU: Contacts of Structural Units for 1R2Z
  • Likely Quarternary Molecular Structure file(s) for 1R2Z
  • Structure Factors (415 Kb)
  • Retrieve 1R2Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1R2Z from S2C, [Save to disk]
  • Re-refined 1r2z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1R2Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1R2Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1R2Z, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1r2za1, region A:135-228 [Jmol] [rasmolscript] [script source]
        - Domain d1r2za2, region A:2-134 [Jmol] [rasmolscript] [script source]
        - Domain d1r2za3, region A:229-274 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1r2z_C] [1r2z_B] [1r2z] [1r2z_A]
  • SWISS-PROT database: [P84131]
  • Domain organization of [P84131_BACST] by SWISSPFAM
  • Domains found in 1R2Z: [Fapy_DNA_glyco] [H2TH ] by SMART
  • Other resources with information on 1R2Z
  • Community annotation for 1R2Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science