1R3H Immune System date Oct 02, 2003
title Crystal Structure Of T10
authors M.G.Rudolph, I.A.Wilson
compound source
Molecule: Mhc H2-Tl-T10-129
Chain: A, C, E, G
Fragment: Extracellular Domain
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Beta-2-Microglobulin
Chain: B, D, F, H
Synonym: Hdcma22p
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.231 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.160 70.050 139.220 90.00 106.79 90.00
method X-Ray Diffractionresolution 2.50 Å
related structures by homologous chain: 1BD2, 1S9X
Gene
Ontology
ChainFunctionProcessComponent
H, F, D, B
  • cellular response to iron io...

  • Primary referenceCombined pseudo-merohedral twinning, non-crystallographic symmetry and pseudo-translation in a monoclinic crystal form of the gammadelta T-cell ligand T10., Rudolph MG, Wingren C, Crowley MP, Chien YH, Wilson IA, Acta Crystallogr D Biol Crystallogr 2004 Apr;60(Pt 4):656-64. Epub 2004, Mar 23. PMID:15039553
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (234 Kb) [Save to disk]
  • Biological Unit Coordinates (1r3h.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (1r3h.pdb2.gz) 60 Kb
  • Biological Unit Coordinates (1r3h.pdb3.gz) 60 Kb
  • Biological Unit Coordinates (1r3h.pdb4.gz) 60 Kb
  • CSU: Contacts of Structural Units for 1R3H
  • Likely Quarternary Molecular Structure file(s) for 1R3H
  • Structure Factors (687 Kb)
  • Retrieve 1R3H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1R3H from S2C, [Save to disk]
  • Re-refined 1r3h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1R3H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1R3H
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1R3H, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1r3ha2, region A:1001-1180 [Jmol] [rasmolscript] [script source]
        - Domain d1r3ha1, region A:1181-1276 [Jmol] [rasmolscript] [script source]
        - Domain d1r3hb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1r3hc2, region C:3001-3180 [Jmol] [rasmolscript] [script source]
        - Domain d1r3hc1, region C:3181-3276 [Jmol] [rasmolscript] [script source]
        - Domain d1r3hd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1r3he2, region E:5001-5180 [Jmol] [rasmolscript] [script source]
        - Domain d1r3he1, region E:5181-5273 [Jmol] [rasmolscript] [script source]
        - Domain d1r3hf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1r3hg2, region G:7001-7180 [Jmol] [rasmolscript] [script source]
        - Domain d1r3hg1, region G:7181-7274 [Jmol] [rasmolscript] [script source]
        - Domain d1r3hh_, region H [Jmol] [rasmolscript] [script source]
  • Fold representative 1r3h from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1r3h_A] [1r3h] [1r3h_H] [1r3h_F] [1r3h_D] [1r3h_G] [1r3h_B] [1r3h_E] [1r3h_C]
  • SWISS-PROT database: [P61769] [Q31206]
  • Domain organization of [B2MG_HUMAN] [Q31206_MOUSE] by SWISSPFAM
  • Domain found in 1R3H: [IGc1 ] by SMART
  • Other resources with information on 1R3H
  • Community annotation for 1R3H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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