1R3H	Immune System	date	Oct 02, 2003
title	Crystal Structure Of T10
authors	M.G.Rudolph, I.A.Wilson
compound		source
Molecule: Mhc H2-Tl-T10-129 Chain: A, C, E, G Fragment: Extracellular Domain Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Beta-2-Microglobulin Chain: B, D, F, H Synonym: Hdcma22p Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: B2m Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.231 R_Free 0.272
crystal cell	length a length b length c angle alpha angle beta angle gamma 78.160 70.050 139.220 90.00 106.79 90.00
method	X-Ray Diffraction	resolution	2.50 Å
related structures	by homologous chain: 1BD2, 1S9X
Gene Ontology	Chain Function Process Component H, F, D, B cellular response to iron io...
Primary reference	Combined pseudo-merohedral twinning, non-crystallographic symmetry and pseudo-translation in a monoclinic crystal form of the gammadelta T-cell ligand T10., Rudolph MG, Wingren C, Crowley MP, Chien YH, Wilson IA, Acta Crystallogr D Biol Crystallogr 2004 Apr;60(Pt 4):656-64. Epub 2004, Mar 23. PMID:15039553

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (228 Kb) [Save to disk] Biological Unit Coordinates (1r3h.pdb1.gz) 59 Kb Biological Unit Coordinates (1r3h.pdb2.gz) 59 Kb Biological Unit Coordinates (1r3h.pdb3.gz) 58 Kb Biological Unit Coordinates (1r3h.pdb4.gz) 59 Kb CSU: Contacts of Structural Units for 1R3H Likely Quarternary Molecular Structure file(s) for 1R3H Structure Factors (687 Kb) Retrieve 1R3H in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1R3H from S2C, [Save to disk] Re-refined 1r3h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1R3H in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1R3H

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1R3H, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1r3ha2, region A:1001-1180 [Jmol] [rasmolscript] [script source]     - Domain d1r3ha1, region A:1181-1276 [Jmol] [rasmolscript] [script source]     - Domain d1r3hb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1r3hc2, region C:3001-3180 [Jmol] [rasmolscript] [script source]     - Domain d1r3hc1, region C:3181-3276 [Jmol] [rasmolscript] [script source]     - Domain d1r3hd_, region D [Jmol] [rasmolscript] [script source]     - Domain d1r3he2, region E:5001-5180 [Jmol] [rasmolscript] [script source]     - Domain d1r3he1, region E:5181-5273 [Jmol] [rasmolscript] [script source]     - Domain d1r3hf_, region F [Jmol] [rasmolscript] [script source]     - Domain d1r3hg2, region G:7001-7180 [Jmol] [rasmolscript] [script source]     - Domain d1r3hg1, region G:7181-7274 [Jmol] [rasmolscript] [script source]     - Domain d1r3hh_, region H [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1r3h_A] [1r3h] [1r3h_H] [1r3h_F] [1r3h_D] [1r3h_G] [1r3h_B] [1r3h_E] [1r3h_C] SWISS-PROT database: [P61769] [Q31206] Domain organization of [B2MG_HUMAN] [Q31206_MOUSE] by SWISSPFAM Domain found in 1R3H: [IGc1 ] by SMART

Other resources with information on 1R3H

Community annotation for 1R3H at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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