1R4I Transcription Dna date Oct 06, 2003
title Crystal Structure Of Androgen Receptor Dna-Binding Domain Bound To A Direct Repeat Response Element
authors P.L.Shaffer, A.Jivan, D.E.Dollins, F.Claessens, D.T.Gewirth
compound source
Molecule: 5'- D(Cpcpapgpapapcpaptpcpapapgpapapcpapg)- 3';
Chain: C
Engineered: Yes
Other_details: Androgen Direct Repeat Response Element
Synthetic: Yes

Molecule: 5'- D(Cptpgptptpcptptpgpaptpgptptpcptpgpg)- 3';
Chain: D
Engineered: Yes
Other_details: Androgen Direct Repeat Response Element

Synthetic: Yes

Molecule: Androgen Receptor
Chain: A, B
Fragment: Dna-Binding Domain
Synonym: Dihydrotestosterone Receptor
Engineered: Yes
Mutation: Yes

Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Ar
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-Nb-Ar1
symmetry Space Group: P 32 2 1
R_factor 0.246 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
137.890 137.890 85.710 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.10 Å
ligand ZN enzyme
note 1R4I (Molecule of the Month:pdb92)
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis of androgen receptor binding to selective androgen response elements., Shaffer PL, Jivan A, Dollins DE, Claessens F, Gewirth DT, Proc Natl Acad Sci U S A 2004 Apr 6;101(14):4758-63. Epub 2004 Mar 22. PMID:15037741
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (1r4i.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 1R4I
  • CSU: Contacts of Structural Units for 1R4I
  • Likely Quarternary Molecular Structure file(s) for 1R4I
  • Structure Factors (340 Kb)
  • Retrieve 1R4I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1R4I from S2C, [Save to disk]
  • Re-refined 1r4i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1R4I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1R4I
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1R4I, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1r4ia_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1r4ib_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1r4i from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1r4i_C] [1r4i_A] [1r4i_B] [1r4i] [1r4i_D]
  • SWISS-PROT database: [P15207]
  • Domain organization of [ANDR_RAT] by SWISSPFAM
  • Domain found in 1R4I: [ZnF_C4 ] by SMART
  • Other resources with information on 1R4I
  • Community annotation for 1R4I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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