1R4I	Transcription Dna	date	Oct 06, 2003
title	Crystal Structure Of Androgen Receptor Dna-Binding Domain Bo Direct Repeat Response Element
authors	P.L.Shaffer, A.Jivan, D.E.Dollins, F.Claessens, D.T.Gewirth
compound		source
Molecule: 5'-D(Cpcpapgpapapcpaptpcpapapgpapa -3'; Chain: C Engineered: Yes Other_details: Androgen Direct Repeat Response Element		Synthetic: Yes
Molecule: 5'-D(Cptpgptptpcptptpgpaptpgptptpc -3'; Chain: D Engineered: Yes Other_details: Androgen Direct Repeat Response Element		Synthetic: Yes
Molecule: Androgen Receptor Chain: A, B Fragment: Dna-Binding Domain Synonym: Dihydrotestosterone Receptor Engineered: Yes Mutation: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Gene: Ar Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-Nb-Ar1
symmetry	Space Group: P 32 2 1	R_factor 0.246 R_Free 0.264
crystal cell	length a length b length c angle alpha angle beta angle gamma 137.890 137.890 85.710 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.10 Å
ligand	ZN	enzyme
note	1R4I (Molecule of the Month:pdb92)
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural basis of androgen receptor binding to selective androgen response elements., Shaffer PL, Jivan A, Dollins DE, Claessens F, Gewirth DT, Proc Natl Acad Sci U S A 2004 Apr 6;101(14):4758-63. Epub 2004 Mar 22. PMID:15037741

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk] Biological Unit Coordinates (1r4i.pdb1.gz) 37 Kb LPC: Ligand-Protein Contacts for 1R4I CSU: Contacts of Structural Units for 1R4I Likely Quarternary Molecular Structure file(s) for 1R4I Structure Factors (340 Kb) Retrieve 1R4I in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1R4I from S2C, [Save to disk] Re-refined 1r4i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1R4I in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1R4I

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1R4I, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1r4ia_, region A [Jmol] [rasmolscript] [script source]     - Domain d1r4ib_, region B [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1r4i_C] [1r4i_A] [1r4i_B] [1r4i] [1r4i_D] SWISS-PROT database: [P15207] Domain organization of [ANDR_RAT] by SWISSPFAM Domain found in 1R4I: [ZnF_C4 ] by SMART

Other resources with information on 1R4I

Community annotation for 1R4I at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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