1R60 Hydrolase date Oct 14, 2003
title A Homology-Derived Model Of Human Tripeptidyl-Peptidase I (Cln2)
authors A.Wlodawer, S.R.Durell, M.Li, H.Oyama, K.Oda, B.M.Dunn
compound source
Molecule: Tripeptidyl-Peptidase I
Chain: A
Synonym: Cln2
Ec: 3.4.14.9
Organism_scientific: Homo Sapiens
Organism_common: Human

Molecule: Pseudoiodotyrostatin
Chain: B
Engineered: Yes

Synthetic: Yes
Other_details: Chemically Synthesized
methodTheoretical Model
ligand
enzyme Hydrolase E.C.3.4.14.9 BRENDA
Primary referenceA model of tripeptidyl-peptidase I (CLN2), a ubiquitous and highly conserved member of the sedolisin family of serine-carboxyl peptidases., Wlodawer A, Durell SR, Li M, Oyama H, Oda K, Dunn BM, BMC Struct Biol 2003 Nov 11;3(1):8. PMID:14609438
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1R60
  • View 1R60 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1R60
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 1r60 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • SWISS-PROT database: [O14773]
  • Domain organization of [TPP1_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1R60 with the sequences similar proteins can be viewed for 1R60's classification [TPP1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [TPP1_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1R60
  • Community annotation for 1R60 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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