1R9U Antibiotic date Oct 31, 2003
title Refined Structure Of Peptaibol Zervamicin Iib In Methanol So From Trans-Hydrogen Bond J Couplings
authors Z.O.Shenkarev, T.A.Balashova, Z.A.Yakimenko, T.V.Ovchinnikova, A.S.Arseniev
compound source
Molecule: Zervamicin Iib
Chain: A
Organism_scientific: Emericellopsis Salmosynnemata
Organism_taxid: 118885
Strain: 336 Imi 58330
methodSolution NMR
ligand ACE, AIB, DIV, HYP, PHL enzyme
Primary referenceBiosynthetic uniform 13C,15N-labelling of zervamicin IIB. Complete 13C and 15N NMR assignment., Ovchinnikova TV, Shenkarev ZO, Yakimenko ZA, Svishcheva NV, Tagaev AA, Skladnev DA, Arseniev AS, J Pept Sci. 2003 Nov-Dec;9(11-12):817-26. PMID:14658801
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (1r9u.pdb1.gz) 5 Kb
  • LPC: Ligand-Protein Contacts for 1R9U
  • CSU: Contacts of Structural Units for 1R9U
  • Original NMR restraints for 1R9U from PDB
  • Retrieve 1R9U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1R9U from S2C, [Save to disk]
  • View 1R9U in 3D
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  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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  • Visual 3D analysis of 1R9U
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  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1R9U, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1r9ua_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1r9u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1r9u] [1r9u_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1R9U
  • Community annotation for 1R9U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
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