1RBJ Hydrolase Dna date May 22, 1995
title Ribonuclease B Complex With D(Tetra-(Deoxy-Adenylate))
authors T.P.Ko, R.Williams, A.Mcpherson
compound source
Molecule: Dna (5'-D(Apapapa)-3')
Chain: B
Engineered: Yes
Synthetic: Yes

Molecule: Protein (Ribonuclease B (E.C.3.1.27.5))
Chain: A
Ec: 3.1.27.5

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Pancreas
Secretion: Milk
symmetry Space Group: P 41 21 2
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.450 44.450 156.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand
enzyme Hydrolase E.C.3.1.27.5 BRENDA
related structures by homologous chain: 1BZQ, 1RTA
Gene
Ontology
ChainFunctionProcessComponent
A
  • ribonuclease A activity


  • Primary referenceStructure of a ribonuclease B+d(pA)4 complex., Ko TP, Williams R, McPherson A, Acta Crystallogr D Biol Crystallogr. 1996 Jan 1;52(Pt 1):160-4. PMID:15299737
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (1rbj.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 1RBJ
  • Likely Quarternary Molecular Structure file(s) for 1RBJ
  • Retrieve 1RBJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RBJ from S2C, [Save to disk]
  • View 1RBJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RBJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1RBJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rbja_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1rbj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rbj_B] [1rbj_A] [1rbj]
  • SWISS-PROT database: [P61823]
  • Domain organization of [RNAS1_BOVIN] by SWISSPFAM
  • Domain found in 1RBJ: [RNAse_Pc ] by SMART
  • Other resources with information on 1RBJ
  • Community annotation for 1RBJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1RBJ from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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