1RC5 CRYSTAL STRUCTURE OF MG(II)-COMPLEX OF RNASE III ENDONUCLEASE DOMAIN FROM AQUIFEX AEOLICUS AT 2.30 ANGSTROM RESOLUTION date
authors Blaszczyk, J., Gan, J., Ji, X.
compound source
symmetry
R_factor
R_Free 0.2553
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand MG enzyme
related structures by homologous chain: 1I4S
Gene AQ
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceNoncatalytic assembly of ribonuclease III with double-stranded RNA., Blaszczyk J, Gan J, Tropea JE, Court DL, Waugh DS, Ji X, Structure (Camb) 2004 Mar;12(3):457-66. PMID:15016361
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (1rc5.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (1rc5.pdb2.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 1RC5
  • CSU: Contacts of Structural Units for 1RC5
  • Likely Quarternary Molecular Structure file(s) for 1RC5
  • Structure Factors (389 Kb)
  • Retrieve 1RC5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RC5 from S2C, [Save to disk]
  • Re-refined 1rc5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1RC5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1RC5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RC5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rc5a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1rc5b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1rc5c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1rc5d_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rc5_B] [1rc5_D] [1rc5] [1rc5_A] [1rc5_C]
  • SWISS-PROT database: [O67082]
  • Domain organization of [RNC_AQUAE] by SWISSPFAM
  • Domain found in 1RC5: [RIBOc ] by SMART
    • Other resources with information on 1RC5
  • Community annotation for 1RC5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science