1RCJ Hydrolase date Nov 04, 2003
title Crystal Structure Of E166a Mutant Of Shv-1 Beta-Lactamase Wi Trans-Enamine Intermediate Of Tazobactam
authors P.S.Padayatti, M.S.Helfand, M.A.Totir, M.P.Carey, A.M.Hujer, P.R. R.A.Bonomo, F.Van Den Akker
compound source
Molecule: Beta-Lactamase Shv-1
Chain: A
Synonym: Pit-2
Ec: 3.5.2.6
Engineered: Yes
Mutation: Yes
Organism_scientific: Klebsiella Pneumoniae
Organism_taxid: 573
Gene: Bla, Shv1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.147 R_Free 0.171
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.848 55.193 83.733 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.63 Å
ligand MA4, TBI enzyme Hydrolase E.C.3.5.2.6 BRENDA
related structures by homologous chain: 1ERM, 1LI0
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTazobactam Forms a Stoichiometric trans-Enamine Intermediate in the E166A Variant of SHV-1 beta-Lactamase: 1.63 A Crystal Structure(,)., Padayatti PS, Helfand MS, Totir MA, Carey MP, Hujer AM, Carey PR, Bonomo RA, Van Den Akker F, Biochemistry 2004 Feb 3;43(4):843-8. PMID:14744126
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (1rcj.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 1RCJ
  • CSU: Contacts of Structural Units for 1RCJ
  • Likely Quarternary Molecular Structure file(s) for 1RCJ
  • Structure Factors (222 Kb)
  • Retrieve 1RCJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RCJ from S2C, [Save to disk]
  • Re-refined 1rcj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1RCJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RCJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RCJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rcja_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rcj_A] [1rcj]
  • SWISS-PROT database: [P0AD64]
  • Domain organization of [BLA1_KLEPN] by SWISSPFAM
  • Other resources with information on 1RCJ
  • Community annotation for 1RCJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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