1RCO Lyase date Oct 31, 1996
title Spinach Rubisco In Complex With The Inhibitor D-Xylulose-2,2 Bisphosphate
authors T.C.Taylor, I.Andersson
compound source
Molecule: Ribulose Bisphosphate Carboxylaseoxygenase
Chain: L, B, E, H, K, O, R, V
Synonym: Rubisco
Ec: 4.1.1.39
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562
Organ: Leaf

Molecule: Ribulose Bisphosphate Carboxylaseoxygenase
Chain: S, C, F, I, M, P, T, W
Synonym: Rubisco
Ec: 4.1.1.39

Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562
Organ: Leaf
symmetry Space Group: P 21 21 2
R_factor 0.239 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
220.600 221.700 115.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand XDP enzyme Lyase E.C.4.1.1.39 BRENDA
related structures by homologous chain: 1RSC, 1UPM, 1UPP
Gene
Ontology
ChainFunctionProcessComponent
K, E, V, L, O, B, H, R


S, F, T, M, C, W, P, I


Primary referenceA common structural basis for the inhibition of ribulose 1,5-bisphosphate carboxylase by 4-carboxyarabinitol 1,5-bisphosphate and xylulose 1,5-bisphosphate., Taylor TC, Fothergill MD, Andersson I, J Biol Chem 1996 Dec 20;271(51):32894-9. PMID:8955130
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (774 Kb) [Save to disk]
  • Biological Unit Coordinates (1rco.pdb1.gz) 768 Kb
  • LPC: Ligand-Protein Contacts for 1RCO
  • CSU: Contacts of Structural Units for 1RCO
  • Likely Quarternary Molecular Structure file(s) for 1RCO
  • Structure Factors (2195 Kb)
  • Retrieve 1RCO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RCO from S2C, [Save to disk]
  • Re-refined 1rco structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1RCO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RCO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RCO, from MSDmotif at EBI
  • Genome occurence of 1RCO's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rcob1, region B:148-475 [Jmol] [rasmolscript] [script source]
        - Domain d1rcob2, region B:9-147 [Jmol] [rasmolscript] [script source]
        - Domain d1rcoc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1rcoe1, region E:148-475 [Jmol] [rasmolscript] [script source]
        - Domain d1rcoe2, region E:9-147 [Jmol] [rasmolscript] [script source]
        - Domain d1rcof_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1rcoh1, region H:148-475 [Jmol] [rasmolscript] [script source]
        - Domain d1rcoh2, region H:9-147 [Jmol] [rasmolscript] [script source]
        - Domain d1rcoi_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1rcok1, region K:148-475 [Jmol] [rasmolscript] [script source]
        - Domain d1rcok2, region K:9-147 [Jmol] [rasmolscript] [script source]
        - Domain d1rcol1, region L:148-475 [Jmol] [rasmolscript] [script source]
        - Domain d1rcol2, region L:9-147 [Jmol] [rasmolscript] [script source]
        - Domain d1rcom_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1rcoo1, region O:148-475 [Jmol] [rasmolscript] [script source]
        - Domain d1rcoo2, region O:9-147 [Jmol] [rasmolscript] [script source]
        - Domain d1rcop_, region P [Jmol] [rasmolscript] [script source]
        - Domain d1rcor1, region R:148-475 [Jmol] [rasmolscript] [script source]
        - Domain d1rcor2, region R:9-147 [Jmol] [rasmolscript] [script source]
        - Domain d1rcos_, region S [Jmol] [rasmolscript] [script source]
        - Domain d1rcot_, region T [Jmol] [rasmolscript] [script source]
        - Domain d1rcov1, region V:148-475 [Jmol] [rasmolscript] [script source]
        - Domain d1rcov2, region V:9-147 [Jmol] [rasmolscript] [script source]
        - Domain d1rcow_, region W [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rco_L] [1rco_V] [1rco_M] [1rco_K] [1rco_B] [1rco_O] [1rco_E] [1rco_W] [1rco_S] [1rco_I] [1rco_T] [1rco] [1rco_F] [1rco_H] [1rco_P] [1rco_C] [1rco_R]
  • SWISS-PROT database: [P00875] [P00870]
  • Domain organization of [RBL_SPIOL] [RBS1_SPIOL] by SWISSPFAM
  • Domain found in 1RCO: [RuBisCO_small ] by SMART
  • Other resources with information on 1RCO
  • Community annotation for 1RCO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science