authors Ng, K.K.S., Drickamer, K., Weis, W.I.
compound source
R_Free 0.237
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand CA, CL, NDG enzyme
related structures by homologous chain: 1KZB, 1RDI
1, 2

Primary referenceStructural analysis of monosaccharide recognition by rat liver mannose-binding protein., Ng KK, Drickamer K, Weis WI, J Biol Chem 1996 Jan 12;271(2):663-74. PMID:8557671
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (1rdn.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 1RDN
  • CSU: Contacts of Structural Units for 1RDN
  • Likely Quarternary Molecular Structure file(s) for 1RDN
  • Structure Factors (170 Kb)
  • Retrieve 1RDN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RDN from S2C, [Save to disk]
  • Re-refined 1rdn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1RDN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RDN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RDN, from MSDmotif at EBI
  • Genome occurence of 1RDN's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rdn1_, region 1 [Jmol] [rasmolscript] [script source]
        - Domain d1rdn2_, region 2 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rdn] [1rdn_1] [1rdn_2]
  • SWISS-PROT database: [P08661]
  • Domain organization of [MBL2_RAT] by SWISSPFAM
  • Domain found in 1RDN: [CLECT ] by SMART
  • Other resources with information on 1RDN
  • Community annotation for 1RDN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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