1RGO	Rna Binding Protein	date	Nov 12, 2003
title	Structural Basis For Recognition Of The Mrna Class II Au-Ric By The Tandem Zinc Finger Domain Of Tis11d
authors	B.P.Hudson, M.A.Martinez-Yamout, H.J.Dyson, P.E.Wright
compound		source
Molecule: Rna (5'-R(Upupapupupupapupu)-3') Chain: D Engineered: Yes		Synthetic: Yes Other_details: Synthetic
Molecule: Butyrate Response Factor 2 Chain: A Synonym: Tis11d Protein, Egf-Response Factor 2, Erf-2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Zfp36l2, Brf2, Tis11d, Erf2 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21a
method	Solution NMR
ligand	ZN	enzyme
related structures	by homologous chain: 1M9O
Gene Ontology	Chain Function Process Component A
Primary reference	Recognition of the mRNA AU-rich element by the zinc finger domain of TIS11d., Hudson BP, Martinez-Yamout MA, Dyson HJ, Wright PE, Nat Struct Mol Biol 2004 Mar;11(3):257-64. Epub 2004 Feb 8. PMID:14981510

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (476 Kb) [Save to disk] Biological Unit Coordinates (1rgo.pdb1.gz) 24 Kb LPC: Ligand-Protein Contacts for 1RGO CSU: Contacts of Structural Units for 1RGO Experimental data, such as chemical shifts, at BioMagResBank (BMRB) NMR Restraints Grid from BioMagResBank (BMRB) Retrieve 1RGO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1RGO from S2C, [Save to disk]

View 1RGO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1RGO

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1RGO, from MSDmotif at EBI Structure summary from SCOR (Structural Classification of RNA) Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1rgoa1, region A:151-186 [Jmol] [rasmolscript] [script source]     - Domain d1rgoa2, region A:187-220 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1rgo_A] [1rgo] [1rgo_D] SWISS-PROT database: [P47974] Domain organization of [TISD_HUMAN] by SWISSPFAM Domain found in 1RGO: [ZnF_C3H1 ] by SMART

Other resources with information on 1RGO

Community annotation for 1RGO at PDBWiki (http://pdbwiki.org) NMR Ensemble (OLDERADO: core, domain and representative structure database) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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