1RHC Oxidoreductase date Nov 14, 2003
title F420-Dependent Secondary Alcohol Dehydrogenase In Complex Wi F420-Acetone Adduct
authors S.W.Aufhammer, E.Warkentin, H.Berk, S.Shima, R.K.Thauer, U.Ermler
compound source
Molecule: F420-Dependent Alcohol Dehydrogenase
Chain: A
Ec: 1.1.99.-
Organism_scientific: Methanoculleus Thermophilus
Organism_taxid: 2200
symmetry Space Group: C 2 2 21
R_factor 0.158 R_Free 0.188
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.824 156.316 60.199 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ACN, CL, F42, K enzyme Oxidoreductase E.C.1.1.99 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCoenzyme binding in f(420)-dependent secondary alcohol dehydrogenase, a member of the bacterial luciferase family., Aufhammer SW, Warkentin E, Berk H, Shima S, Thauer RK, Ermler U, Structure (Camb) 2004 Mar;12(3):361-70. PMID:15016352
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (1rhc.pdb1.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 1RHC
  • CSU: Contacts of Structural Units for 1RHC
  • Likely Quarternary Molecular Structure file(s) for 1RHC
  • Structure Factors (309 Kb)
  • Retrieve 1RHC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RHC from S2C, [Save to disk]
  • Re-refined 1rhc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1RHC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RHC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RHC, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rhca_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rhc_A] [1rhc]
  • SWISS-PROT database: [O93734]
  • Domain organization of [O93734_9EURY] by SWISSPFAM
  • Other resources with information on 1RHC
  • Community annotation for 1RHC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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