1RHQ CRYSTAL STRUCTURE OF THE COMPLEX OF CASPASE-3 WITH A BROMOMETHOXYPHENYL INHIBITOR date
authors Becker, J.W., Rotonda, J., Soisson, S.M.
compound source
symmetry
R_factor
R_Free 0.354
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
ligand 0ZZ enzyme
related structures by homologous chain: 1RHR
Gene
Ontology
ChainFunctionProcessComponent
A, D


E, B


Primary referenceReducing the peptidyl features of caspase-3 inhibitors: a structural analysis., Becker JW, Rotonda J, Soisson SM, Aspiotis R, Bayly C, Francoeur S, Gallant M, Garcia-Calvo M, Giroux A, Grimm E, Han Y, McKay D, Nicholson DW, Peterson E, Renaud J, Roy S, Thornberry N, Zamboni R, J Med Chem 2004 May 6;47(10):2466-74. PMID:15115390
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (1rhq.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 1RHQ
  • CSU: Contacts of Structural Units for 1RHQ
  • Likely Quarternary Molecular Structure file(s) for 1RHQ
  • Structure Factors (74 Kb)
  • Retrieve 1RHQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RHQ from S2C, [Save to disk]
  • Re-refined 1rhq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1RHQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RHQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RHQ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rhq.1, region A:,B [Jmol] [rasmolscript] [script source]
        - Domain d1rhq.2, region D:,E [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rhq_A] [1rhq_E] [1rhq_D] [1rhq] [1rhq_B] [1rhq_F] [1rhq_C]
  • SWISS-PROT database: [P42574]
  • Domain organization of [CASP3_HUMAN] by SWISSPFAM
  • Domain found in 1RHQ: [CASc ] by SMART
  • Other resources with information on 1RHQ
  • Community annotation for 1RHQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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