1RI9 Signaling Protein date Nov 17, 2003
title Structure Of A Helically Extended Sh3 Domain Of The T Cell A Protein Adap
authors K.Heuer, M.Kofler, G.Langdon, K.Thiemke, C.Freund
compound source
Molecule: Fyn-Binding Protein
Chain: A
Fragment: Residues 683-771 Of Adap Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fyb, Slap130
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptft74
methodSolution NMR
note 1RI9 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of a Helically Extended SH3 Domain of the T Cell Adapter Protein ADAP., Heuer K, Kofler M, Langdon G, Thiemke K, Freund C, Structure (Camb) 2004 Apr;12(4):603-10. PMID:15062083
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (412 Kb) [Save to disk]
  • Biological Unit Coordinates (1ri9.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 1RI9
  • Original NMR restraints for 1RI9 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1RI9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RI9 from S2C, [Save to disk]
  • View 1RI9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RI9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RI9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ri9a_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ri9_A] [1ri9]
  • SWISS-PROT database: [O15117]
  • Domain organization of [FYB_HUMAN] by SWISSPFAM
  • Domain found in 1RI9: [SH3 ] by SMART
  • Other resources with information on 1RI9
  • Community annotation for 1RI9 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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